Difference between revisions of "OpenFreezer"
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| collapsible = | | collapsible = | ||
| author = | | author = | ||
| developer = Marina Olhovsky, [http:// | | developer = Marina Olhovsky, [http://openfreezersoftware.lunenfeld.ca/about.html others] | ||
| released = Start date unknown | | released = Start date unknown | ||
| discontinued = | | discontinued = | ||
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| status = | | status = | ||
| genre = [[Laboratory informatics]] software | | genre = [[Laboratory informatics]] software | ||
| license = GNU General Public License v3<ref name="OFDload">{{cite web |url=http:// | | license = GNU General Public License v3<ref name="OFDload">{{cite web |url=http://openfreezersoftware.lunenfeld.ca/download.html |title=OpenFreezer - Download and Install Instructions |publisher=Marina Olhovsky |accessdate=26 August 2020}}</ref> | ||
| website = [http:// | | website = [http://openfreezersoftware.lunenfeld.ca/ openfreezersoftware.lunenfeld.ca] | ||
}} | }} | ||
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==Product history== | ==Product history== | ||
It's not clear when development first began on OpenFreezer, but a SourceForge project was started by developer Marina Olhovsky on July 18, 2011<ref name="OFStart">{{cite web |url=http://sourceforge.net/projects/openfreezer/ |title=OpenFreezer |publisher=SourceForge |accessdate=02 October 2012}}</ref>, followed by a file release two days later.<ref name="OFSFFiles">{{cite web |url=http://sourceforge.net/projects/openfreezer/files/ |title=OpenFreezer - Files |publisher=SourceForge |accessdate=02 October 2012}}</ref>. According to the documentation page of the OpenFreezer demo site, the following releases have been made, though when they were released is unknown: 1.1.2, 1.1.3, 1.2, 1.3, 2.0, 3.0, 3.1<ref name="OFDemoDoc">{{cite web |url=http:// | It's not clear when development first began on OpenFreezer, but a SourceForge project was started by developer Marina Olhovsky on July 18, 2011<ref name="OFStart">{{cite web |url=http://sourceforge.net/projects/openfreezer/ |title=OpenFreezer |publisher=SourceForge |accessdate=02 October 2012}}</ref>, followed by a file release two days later.<ref name="OFSFFiles">{{cite web |url=http://sourceforge.net/projects/openfreezer/files/ |title=OpenFreezer - Files |publisher=SourceForge |accessdate=02 October 2012}}</ref>. According to the documentation page of the OpenFreezer demo site, the following releases have been made, though when they were released is unknown: 1.1.2, 1.1.3, 1.2, 1.3, 2.0, 3.0, 3.1<ref name="OFDemoDoc">{{cite web |url=http://openfreezersoftware.lunenfeld.ca/demo/OpenFreezer/docs.php |title=OpenFreezer - OpenFreezer Documentation |publisher=Marina Olhovsky |accessdate=26 August 2020}}</ref> | ||
The most current release is assumed to be version 3.2, release date unknown.<ref name="OFUGuide">{{cite web |url=http:// | The most current release is assumed to be version 3.2, release date unknown.<ref name="OFUGuide">{{cite web |url=http://openfreezersoftware.lunenfeld.ca/open_manual.phphp |format=PDF |title=Manual For OpenFreezer Version 3.2 |publisher=Samuel Lunenfeld Research Institute, Mount Sinai Hospital |date=December 2011 |accessdate=26 August 2020}}</ref> In February 2014, the developers placed a message on the site's front page that a new version was anticipated for "the end of 2014, and [it] will include batch reagent creation."<ref name="OFHome">{{cite web |url=http://openfreezer.org/ |archiveurl=https://web.archive.org/web/20140902050509/http://openfreezer.org/ |title=OpenFreezer |publisher=Samuel Lunenfeld Research Institute, Mount Sinai Hospital |date=February 2014 |archivedate=02 September 2014 |accessdate=26 August 2020}}</ref> However, that update has not been realized as of August 2020. | ||
==Features== | ==Features== | ||
| Line 56: | Line 56: | ||
==Videos, screenshots, and other media== | ==Videos, screenshots, and other media== | ||
* A demo of OpenFreezer can be accessed [http:// | * A demo of OpenFreezer can be accessed [http://openfreezersoftware.lunenfeld.ca/demo/OpenFreezer/index.php here]. | ||
* The [http:// | * The [http://openfreezersoftware.lunenfeld.ca/open_manual.php user guide] has extensive information, including screenshots of the program. | ||
==Entities using OpenFreezer== | ==Entities using OpenFreezer== | ||
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==Further reading== | ==Further reading== | ||
* {{cite journal | * {{cite journal |title=OpenFreezer: A reagent information management software system |journal=Nature Methods |author=Olhovsky, Marina; Williton, Kelly; Dai, Anna Yue; Pasculescu, Adrian; Lee,John Paul; Goudreault, Marilyn; Wells, Clark D.; Park, Jin Gyoon; Gingras, Anne-Claude; Linding, Rune; Pawson, Tony; Colwill, Karen |volume=8 |issue=8 |pages=612–613 |year=2011 |doi=10.1038/nmeth.1658 |pmid=21799493}} | ||
==External links== | ==External links== | ||
Latest revision as of 18:26, 26 August 2020
 | |
| Developer(s) | Marina Olhovsky, others |
|---|---|
| Initial release | Start date unknown |
| Stable release |
3.2 (Release date unknown) [±] |
| Preview release | none [±] |
| Written in | PHP, Python |
| Operating system | Cross-platform |
| Type | Laboratory informatics software |
| License(s) | GNU General Public License v3[1] |
| Website | openfreezersoftware.lunenfeld.ca |
OpenFreezer is an open-source laboratory information management system (LIMS) designed to help biological laboratories with reagent tracking and workflow design.
Product history
It's not clear when development first began on OpenFreezer, but a SourceForge project was started by developer Marina Olhovsky on July 18, 2011[2], followed by a file release two days later.[3]. According to the documentation page of the OpenFreezer demo site, the following releases have been made, though when they were released is unknown: 1.1.2, 1.1.3, 1.2, 1.3, 2.0, 3.0, 3.1[4]
The most current release is assumed to be version 3.2, release date unknown.[5] In February 2014, the developers placed a message on the site's front page that a new version was anticipated for "the end of 2014, and [it] will include batch reagent creation."[6] However, that update has not been realized as of August 2020.
Features
Features of OpenFreezer include[5]:
- reagent and chemical management
- reagent and chemical tracking
- reagent-centered workflow tools
- project management
- user-based security
Hardware/software requirements
Requirements for proper installation of OpenFreezer include:
- MySQL version 5 or later
- PHP version 5 or later
- Apache web server
- Python version 2.4 or later
- BioPython
- ReportLab
- Overlib
Refer to the installation and setup guide for more information.
Videos, screenshots, and other media
- A demo of OpenFreezer can be accessed here.
- The user guide has extensive information, including screenshots of the program.
Entities using OpenFreezer
Further reading
- Olhovsky, Marina; Williton, Kelly; Dai, Anna Yue; Pasculescu, Adrian; Lee,John Paul; Goudreault, Marilyn; Wells, Clark D.; Park, Jin Gyoon; Gingras, Anne-Claude; Linding, Rune; Pawson, Tony; Colwill, Karen (2011). "OpenFreezer: A reagent information management software system". Nature Methods 8 (8): 612–613. doi:10.1038/nmeth.1658. PMID 21799493.
External links
- A fork of OpenFreezer on GitHub
OpenFreezer can also be found on SourceForge. However, use caution when downloading and installing from there; the install package may contain undesirable add-on software.
References
- ↑ "OpenFreezer - Download and Install Instructions". Marina Olhovsky. http://openfreezersoftware.lunenfeld.ca/download.html. Retrieved 26 August 2020.
- ↑ "OpenFreezer". SourceForge. http://sourceforge.net/projects/openfreezer/. Retrieved 02 October 2012.
- ↑ "OpenFreezer - Files". SourceForge. http://sourceforge.net/projects/openfreezer/files/. Retrieved 02 October 2012.
- ↑ "OpenFreezer - OpenFreezer Documentation". Marina Olhovsky. http://openfreezersoftware.lunenfeld.ca/demo/OpenFreezer/docs.php. Retrieved 26 August 2020.
- ↑ 5.0 5.1 "Manual For OpenFreezer Version 3.2" (PDF). Samuel Lunenfeld Research Institute, Mount Sinai Hospital. December 2011. http://openfreezersoftware.lunenfeld.ca/open_manual.phphp. Retrieved 26 August 2020.
- ↑ "OpenFreezer". Samuel Lunenfeld Research Institute, Mount Sinai Hospital. February 2014. Archived from the original on 02 September 2014. https://web.archive.org/web/20140902050509/http://openfreezer.org/. Retrieved 26 August 2020.
