Difference between revisions of "Stanford University School of Medicine"
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|founder = | |founder = | ||
|defunct = | |defunct = | ||
|location_city = 291 Campus Drive, Rm LK3C02, Li Ka Shing Building, 3rd floor | |location_city = 291 Campus Drive, Rm LK3C02, Li Ka Shing Building, 3rd floor<br />Dean's Office, MC 5216, Stanford, California | ||
|location_country = U.S. | |location_country = U.S. | ||
|locations = | |locations = | ||
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|num_employees = | |num_employees = | ||
|parent = Stanford University | |parent = Stanford University | ||
|divisions = [ | |divisions = [https://med.stanford.edu/school/directory.html Various] | ||
|subsid = | |subsid = | ||
|homepage = [ | |homepage = [https://med.stanford.edu/ med.stanford.edu] | ||
|linkedin = [https://www.linkedin.com/school/stanford-university-school-of-medicine/ https://www.linkedin.com/school/stanford-university-school-of-medicine/] | |||
|footnotes = | |footnotes = | ||
|intl = No | |intl = No | ||
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===MendeLIMS=== | ===MendeLIMS=== | ||
MendeLIMS is a [[laboratory information management system]] (LIMS) developed by the medical school's Ji Research Group in the Division of Oncology. The LIMS was designed to aid those conducting "[l]arge clinical genomics studies [that] require the ability to select and track samples from a large population of patients through the various experimental steps involved in genome sequencing."<ref name="JRGSoft">{{cite web |url= | MendeLIMS is a [[laboratory information management system]] (LIMS) developed by the medical school's Ji Research Group in the Division of Oncology.<ref name="GrimesMende14">{{cite journal |title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing |journal=BMC Bioinformatics |author=Grimes, Susan M.; Ji, Hanlee P. |volume=15 |pages=290 |year=2014 |doi=10.1186/1471-2105-15-290 |pmid=25159034 |pmc=PMC4155081}}</ref> The LIMS was designed to aid those conducting "[l]arge clinical genomics studies [that] require the ability to select and track samples from a large population of patients through the various experimental steps involved in genome sequencing."<ref name="JRGSoft">{{cite web |url=https://dna-discovery.stanford.edu/research/software/ |title=Ji Research Group - Software |publisher=Stanford University School of Medicine |accessdate=23 October 2019}}</ref> The software is free to download and use. | ||
For all sequencing-related software, see the research group's [ | For all sequencing-related software, see the research group's [https://dna-discovery.stanford.edu/research/software/ web page]. | ||
====Features==== | ====Features==== | ||
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{| class="wikitable collapsible" style="border-style:none;" background="#ffffff" border="0" cellpadding="0" cellspacing="0" | {| class="wikitable collapsible" style="border-style:none;" background="#ffffff" border="0" cellpadding="0" cellspacing="0" | ||
|- | |- | ||
! colspan="2"| Product: [ | ! colspan="2"| Product: [https://dna-discovery.stanford.edu/research/software/mendelims/ MendeLIMS] | ||
|- | |- | ||
| style="background-color:white; border-style:none;"| {{Databox LIMSfeature | | style="background-color:white; border-style:none;"| {{Databox LIMSfeature | ||
| sample_login_man = Y<ref name="MLUser">{{cite web |url= | | sample_login_man = Y<ref name="MLUser">{{cite web |url=https://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_UserGuide.pdf |format=PDF |title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing - User Guide |publisher=Stanford University School of Medicine |date=03 June 2013 |accessdate=08 October 2021}}</ref> | ||
| sample_track = Y<ref name="MLUser" /> | | sample_track = Y<ref name="MLUser" /> | ||
| sample_batch = Y<ref name="MLUser" /> | | sample_batch = Y<ref name="MLUser" /> | ||
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| usage_cost = | | usage_cost = | ||
| industries = | | industries = high-throughput sequencing | ||
}} | }} | ||
|- | |- | ||
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====Pricing==== | ====Pricing==== | ||
The software is free to download and use. | The software is free to download and use. | ||
====Additional information==== | ====Additional information==== | ||
* [http://dna-discovery.stanford.edu/ | * [http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_UserGuide.pdf MendeLIMS user guide] | ||
* [http://dna-discovery.stanford.edu/ | * [http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_Install.pdf MendeLIMS installation guide] | ||
* [https://github.com/sgtc-stanford/mendeLIMS MendeLIMS download location] (reading installation guide recommended) | * [https://github.com/sgtc-stanford/mendeLIMS MendeLIMS download location] (reading installation guide recommended) | ||
* [http://mendelims.stanford.edu/ MendeLIMS demo site] | * [http://mendelims.stanford.edu/ MendeLIMS demo site] | ||
* [ | * [https://dna-discovery.stanford.edu/research/software/ Software from Ji Research Group] | ||
==References== | ==References== | ||
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<!---Place all category tags here--> | <!---Place all category tags here--> | ||
[[Category: | [[Category:High-throughput sequencing LIMS]] | ||
[[Category:LIMS vendor]] | [[Category:LIMS vendor]] | ||
[[Category:Vendors]] | [[Category:Vendors]] | ||
Latest revision as of 23:11, 2 March 2022
| Industry | Education |
|---|---|
| Headquarters |
291 Campus Drive, Rm LK3C02, Li Ka Shing Building, 3rd floor Dean's Office, MC 5216, Stanford, California, U.S. |
| Area served | U.S. |
| Products |
Products list
|
| Parent | Stanford University |
| Divisions | Various |
| Website | med.stanford.edu |
| https://www.linkedin.com/school/stanford-university-school-of-medicine/ |
Stanford University School of Medicine is one of the oldest medical schools in the United States.
History
Technology and products
MendeLIMS
MendeLIMS is a laboratory information management system (LIMS) developed by the medical school's Ji Research Group in the Division of Oncology.[1] The LIMS was designed to aid those conducting "[l]arge clinical genomics studies [that] require the ability to select and track samples from a large population of patients through the various experimental steps involved in genome sequencing."[2] The software is free to download and use.
For all sequencing-related software, see the research group's web page.
Features
 |
The following feature list(s) is/are derived solely from public, freely-available online information the vendor provides. A lack of a "Y" does not necessarily mean that the product doesn't have that feature. The lack of a "Y" could mean:
|
Pricing
The software is free to download and use.
Additional information
- MendeLIMS user guide
- MendeLIMS installation guide
- MendeLIMS download location (reading installation guide recommended)
- MendeLIMS demo site
- Software from Ji Research Group
References
- ↑ Grimes, Susan M.; Ji, Hanlee P. (2014). "MendeLIMS: A web-based laboratory information management system for clinical genome sequencing". BMC Bioinformatics 15: 290. doi:10.1186/1471-2105-15-290. PMC PMC4155081. PMID 25159034. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=PMC4155081.
- ↑ "Ji Research Group - Software". Stanford University School of Medicine. https://dna-discovery.stanford.edu/research/software/. Retrieved 23 October 2019.
- ↑ 3.00 3.01 3.02 3.03 3.04 3.05 3.06 3.07 3.08 3.09 3.10 3.11 3.12 "MendeLIMS: A web-based laboratory information management system for clinical genome sequencing - User Guide" (PDF). Stanford University School of Medicine. 3 June 2013. https://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_UserGuide.pdf. Retrieved 08 October 2021.
