Difference between revisions of "Template:Article of the week"

From LIMSWiki
Jump to navigationJump to search
(Updated article of the week text.)
(Updated article of the week text)
 
(328 intermediate revisions by the same user not shown)
Line 1: Line 1:
<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Fig1 Reid BMCInformatics2014 15.jpg|220px]]</div>
<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Fig1 Huang iScience2022 25-8.jpg|240px]]</div>
'''"[[Journal:Launching genomics into the cloud: Deployment of Mercury, a next generation sequence analysis pipeline|Launching genomics into the cloud: Deployment of Mercury, a next generation sequence analysis pipeline]]"'''
'''"[[Journal:Elegancy: Digitizing the wisdom from laboratories to the cloud with free no-code platform|Elegancy: Digitizing the wisdom from laboratories to the cloud with free no-code platform]]"'''
 
Massively parallel DNA sequencing generates staggering amounts of data. Decreasing cost, increasing throughput, and improved annotation have expanded the diversity of genomics applications in research and clinical practice. This expanding scale creates analytical challenges: accommodating peak compute demand, coordinating secure access for multiple analysts, and sharing validated tools and results.
 
To address these challenges, we have developed the Mercury analysis pipeline and deployed it in local hardware and the Amazon Web Services cloud via the DNAnexus platform. Mercury is an automated, flexible, and extensible analysis workflow that provides accurate and reproducible genomic results at scales ranging from individuals to large cohorts.
 
By taking advantage of cloud computing and with Mercury implemented on the DNAnexus platform, we have demonstrated a powerful combination of a robust and fully validated software pipeline and a scalable computational resource that, to date, we have applied to more than 10,000 whole genome and whole exome samples. ('''[[Journal:Launching genomics into the cloud: Deployment of Mercury, a next generation sequence analysis pipeline|Full article...]]''')<br />


One of the top priorities in any [[laboratory]] is [[Archival informatics|archiving]] experimental data in the most secure, efficient, and errorless way. It is especially important to those in chemical and biological research, for it is more likely to damage experiment records. In addition, the transmission of experiment results from paper to electronic devices is time-consuming and redundant. Therefore, we introduce an [[Open-source software|open-source]] no-code [[electronic laboratory notebook]] (ELN), Elegancy, a [[Cloud computing|cloud-based]]/standalone web service distributed as a Docker image. Elegancy fits all laboratories but is specially equipped with several features benefitting biochemical laboratories. It can be accessed via various web browsers, allowing researchers to upload photos or audio recordings directly from their mobile devices. Elegancy also contains a meeting arrangement module, audit/revision control, and laboratory supply management system. We believe Elegancy could help the scientific research community gather evidence, share information, reorganize knowledge, and digitize laboratory works with greater ease and security ... ('''[[Journal:Elegancy: Digitizing the wisdom from laboratories to the cloud with free no-code platform|Full article...]]''')<br />
<br />
<br />
''Recently featured'': [[Journal:Benefits of the community for partners of open source vendors|Benefits of the community for partners of open source vendors]], [[Journal:adLIMS: A customized open source software that allows bridging clinical and basic molecular research studies|adLIMS: A customized open source software that allows bridging clinical and basic molecular research studies]], [[Journal:MendeLIMS: A web-based laboratory information management system for clinical genome sequencing|MendeLIMS: A web-based laboratory information management system for clinical genome sequencing]]
''Recently featured'':
{{flowlist |
* [[Journal:Implementing an institution-wide electronic laboratory notebook initiative|Implementing an institution-wide electronic laboratory notebook initiative]]
* [[Journal:Quality and environmental management systems as business tools to enhance ESG performance: A cross-regional empirical study|Quality and environmental management systems as business tools to enhance ESG performance: A cross-regional empirical study]]
* [[Journal:PIKAChU: A Python-based informatics kit for analyzing chemical units|PIKAChU: A Python-based informatics kit for analyzing chemical units]]
}}

Latest revision as of 17:08, 10 April 2023

Fig1 Huang iScience2022 25-8.jpg

"Elegancy: Digitizing the wisdom from laboratories to the cloud with free no-code platform"

One of the top priorities in any laboratory is archiving experimental data in the most secure, efficient, and errorless way. It is especially important to those in chemical and biological research, for it is more likely to damage experiment records. In addition, the transmission of experiment results from paper to electronic devices is time-consuming and redundant. Therefore, we introduce an open-source no-code electronic laboratory notebook (ELN), Elegancy, a cloud-based/standalone web service distributed as a Docker image. Elegancy fits all laboratories but is specially equipped with several features benefitting biochemical laboratories. It can be accessed via various web browsers, allowing researchers to upload photos or audio recordings directly from their mobile devices. Elegancy also contains a meeting arrangement module, audit/revision control, and laboratory supply management system. We believe Elegancy could help the scientific research community gather evidence, share information, reorganize knowledge, and digitize laboratory works with greater ease and security ... (Full article...)

Recently featured:

Retrieved from "https://test.limswiki.org/index.php?title=Template:Article_of_the_week&oldid=51769"