Difference between revisions of "Template:Article of the week"

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<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Fig1 OConnor BMCInformatics2010 11-12.jpg|240px]]</div>
<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Fig1 Huang iScience2022 25-8.jpg|240px]]</div>
'''"[[Journal:SeqWare Query Engine: Storing and searching sequence data in the cloud|SeqWare Query Engine: Storing and searching sequence data in the cloud]]"'''
'''"[[Journal:Elegancy: Digitizing the wisdom from laboratories to the cloud with free no-code platform|Elegancy: Digitizing the wisdom from laboratories to the cloud with free no-code platform]]"'''
 
Since the introduction of next-generation DNA sequencers the rapid increase in [[Sequencing|sequencer]] throughput, and associated drop in costs, has resulted in more than a dozen human [[Genomics|genomes]] being resequenced over the last few years. These efforts are merely a prelude for a future in which genome resequencing will be commonplace for both biomedical research and clinical applications. The dramatic increase in sequencer output strains all facets of computational infrastructure, especially databases and query interfaces. The advent of cloud computing, and a variety of powerful tools designed to process petascale datasets, provide a compelling solution to these ever increasing demands.
 
In this work, we present the [[SeqWare]] Query Engine which has been created using modern cloud computing technologies and designed to support databasing information from thousands of genomes. Our backend implementation was built using the highly scalable, NoSQL HBase database from the Hadoop project. We also created a web-based frontend that provides both a programmatic and interactive query interface and integrates with widely used genome browsers and tools. ('''[[Journal:SeqWare Query Engine: Storing and searching sequence data in the cloud|Full article...]]''')<br />


One of the top priorities in any [[laboratory]] is [[Archival informatics|archiving]] experimental data in the most secure, efficient, and errorless way. It is especially important to those in chemical and biological research, for it is more likely to damage experiment records. In addition, the transmission of experiment results from paper to electronic devices is time-consuming and redundant. Therefore, we introduce an [[Open-source software|open-source]] no-code [[electronic laboratory notebook]] (ELN), Elegancy, a [[Cloud computing|cloud-based]]/standalone web service distributed as a Docker image. Elegancy fits all laboratories but is specially equipped with several features benefitting biochemical laboratories. It can be accessed via various web browsers, allowing researchers to upload photos or audio recordings directly from their mobile devices. Elegancy also contains a meeting arrangement module, audit/revision control, and laboratory supply management system. We believe Elegancy could help the scientific research community gather evidence, share information, reorganize knowledge, and digitize laboratory works with greater ease and security ... ('''[[Journal:Elegancy: Digitizing the wisdom from laboratories to the cloud with free no-code platform|Full article...]]''')<br />
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Latest revision as of 17:08, 10 April 2023

Fig1 Huang iScience2022 25-8.jpg

"Elegancy: Digitizing the wisdom from laboratories to the cloud with free no-code platform"

One of the top priorities in any laboratory is archiving experimental data in the most secure, efficient, and errorless way. It is especially important to those in chemical and biological research, for it is more likely to damage experiment records. In addition, the transmission of experiment results from paper to electronic devices is time-consuming and redundant. Therefore, we introduce an open-source no-code electronic laboratory notebook (ELN), Elegancy, a cloud-based/standalone web service distributed as a Docker image. Elegancy fits all laboratories but is specially equipped with several features benefitting biochemical laboratories. It can be accessed via various web browsers, allowing researchers to upload photos or audio recordings directly from their mobile devices. Elegancy also contains a meeting arrangement module, audit/revision control, and laboratory supply management system. We believe Elegancy could help the scientific research community gather evidence, share information, reorganize knowledge, and digitize laboratory works with greater ease and security ... (Full article...)

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