Difference between revisions of "User:Shawndouglas/sandbox/sublevel2"

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<div class="nonumtoc">__TOC__</div>
<div class="nonumtoc">__TOC__</div>
These addendums to the [[User:Shawndouglas/sandbox#System questionnaire|primary system questionnaire]] cover system-specific laboratory requirements not common to the [[laboratory information management system]].  
{{ombox
| type      = notice
| style    = width: 960px;
| text      = This is sublevel2 of my sandbox, where I play with features and test MediaWiki code. If you wish to leave a comment for me, please see [[User_talk:Shawndouglas|my discussion page]] instead.<p></p>
}}


'''NOTE''': These addendums are meant to represent ''additional'' user requirement specs unique to the system and not represented in the primary system questionnaire.
==Sandbox begins below==
 
==1.5 System-specific==
{|
| STYLE="vertical-align:top;"|
===1.5a [[Laboratory information system]]===
{| class="wikitable collapsible" border="1" cellpadding="10" cellspacing="0"
|-
  ! colspan="3" style="color:DarkSlateGray; text-align:left; padding-left:40px;"| 1.5a.1 '''General functions'''
|-
  ! style="color:brown; background-color:#ffffee; width:500px;"| Request for information
  ! style="color:brown; background-color:#ffffee; width:100px;"| Requirement code
  ! style="color:brown; background-color:#ffffee; width:700px;"| Vendor response
|-
  | style="padding:5px; width:500px;" |'''a.''' Does your system include clinical trial management tools? If so, elaborate.
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''b.''' Does your system provide patient case management and assignment?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''c.''' Does your system provide physician, clinic, and contract lab management tools?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''d.''' Does your system provide outreach and call list management tools?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''e.''' Does your system provide multi-site and multi-lab management tools?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''f.''' Does your system provide disease tracking functionality?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''g.''' Does your system monitor turnaround time, from test request to clinician review?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''h.''' Is your system veterinary compatible?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
|}
{| class="wikitable collapsible" border="1" cellpadding="10" cellspacing="0"
|-
  ! colspan="3" style="color:DarkSlateGray; text-align:left; padding-left:40px;"| 1.5a.2 '''Configuration and customization'''
|-
  ! style="color:brown; background-color:#ffffee; width:500px;"| Request for information
  ! style="color:brown; background-color:#ffffee; width:100px;"| Requirement code
  ! style="color:brown; background-color:#ffffee; width:700px;"| Vendor response
|-
  | style="padding:5px; width:500px;" |'''a.''' Does your system permit users to create templates and worksheets for standardizing analysis pages, patient pages, test ordering pages, and/or the reporting processes?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''b.''' Does your system provide flexible and customizable mapping dictionaries for interconversion of different standards and more?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''c.''' Does your system support customizable test, panel, and profile libraries?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''d.''' Does your system support provisions for correctional facilities?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''e.''' Does your system support customization of test pick lists based on specialty utilization?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
|}
{| class="wikitable collapsible" border="1" cellpadding="10" cellspacing="0"
|-
  ! colspan="3" style="color:DarkSlateGray; text-align:left; padding-left:40px;"| 1.5a.3 '''Receiving and scheduling'''
|-
  ! style="color:brown; background-color:#ffffee; width:500px;"| Request for information
  ! style="color:brown; background-color:#ffffee; width:100px;"| Requirement code
  ! style="color:brown; background-color:#ffffee; width:700px;"| Vendor response
|-
  | style="padding:5px; width:500px;" |'''a.''' Does your system allow users to create, manage, and track viewable sample container schemata?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''b.''' Does your system feature order entry rules for better managing duplicate orders, rejecting inappropriate tests, identifying inappropriate containers, rerouting tests to outside labs, etc.?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''c.''' Does your system automatically split and manage orders requiring multiple testing locations?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''d.''' Does your system create and manage administrative documents for genetics testing?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''e.''' Does your system allow standing orders and test schedules to be defined for future orders?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''f.''' Can your system import and utilize the [[Centers for Medicare and Medicaid Services]]' (CMS') National and Local Coverage Determinations files?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''g.''' Does your system track and manage advance beneficiary notices (ABNs) from CMS as needed?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''h.''' Can your system differentiate "investigation use only" and "research use only" tests?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
|}
{| class="wikitable collapsible" border="1" cellpadding="10" cellspacing="0"
|-
  ! colspan="3" style="color:DarkSlateGray; text-align:left; padding-left:40px;"| 1.5a.4 '''Analysis and data entry'''
|-
  ! style="color:brown; background-color:#ffffee; width:500px;"| Request for information
  ! style="color:brown; background-color:#ffffee; width:100px;"| Requirement code
  ! style="color:brown; background-color:#ffffee; width:700px;"| Vendor response
|-
  | style="padding:5px; width:500px;" |'''a.''' Does your system effectively manage complex molecular protocols? Explain.
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''b.''' Does your system effectively manage genetic testing protocols? Explain.
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''c.''' Does your system effectively manage histology and cytology protocols? Explain.
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''d.''' Does your system allow for user-definable and procedure-specific protocols for HIV specimens? Explain.
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''e.''' Does your system effectively manage [[biobank|biobanking]] and blood banking activities and the data associated with them? Explain.
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
|}
{| class="wikitable collapsible" border="1" cellpadding="10" cellspacing="0"
|-
  ! colspan="3" style="color:DarkSlateGray; text-align:left; padding-left:40px;"| 1.5a.5 '''Post-analysis and validation'''
|-
  ! style="color:brown; background-color:#ffffee; width:500px;"| Request for information
  ! style="color:brown; background-color:#ffffee; width:100px;"| Requirement code
  ! style="color:brown; background-color:#ffffee; width:700px;"| Vendor response
|-
  | style="padding:5px; width:500px;" |'''a.''' Does your system include data mining tools for model learning, evaluation, and usage?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''b.''' Does your system report molecular results in both clinical and anatomical pathology environments?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''c.''' Does your system provide tools for graphical patient and analyte trend plotting?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''d.''' Can your system hold all test results on a specimen with multiple tests ordered on it until all work is completed and a final report is issued?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
|}
{| class="wikitable collapsible" border="1" cellpadding="10" cellspacing="0"
|-
  ! colspan="3" style="color:DarkSlateGray; text-align:left; padding-left:40px;"| 1.5a.6 '''Instruments'''
|-
  ! style="color:brown; background-color:#ffffee; width:500px;"| Request for information
  ! style="color:brown; background-color:#ffffee; width:100px;"| Requirement code
  ! style="color:brown; background-color:#ffffee; width:700px;"| Vendor response
|-
  | style="padding:5px; width:500px;" |'''a.''' No LIS-specific instrument requirements as of yet
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
|}
{| class="wikitable collapsible" border="1" cellpadding="10" cellspacing="0"
|-
  ! colspan="3" style="color:DarkSlateGray; text-align:left; padding-left:40px;"| 1.5a.7 '''External system interfaces'''
|-
  ! style="color:brown; background-color:#ffffee; width:500px;"| Request for information
  ! style="color:brown; background-color:#ffffee; width:100px;"| Requirement code
  ! style="color:brown; background-color:#ffffee; width:700px;"| Vendor response
|-
  | style="padding:5px; width:500px;" |'''a.''' Can your system interface with a [[hospital information system]]?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''b.''' Can your system interface with an [[electronic medical record]] or [[electronic health record]] system?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''c.''' Can your system interface with reference laboratories? If so, explain how.
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
|}
{| class="wikitable collapsible" border="1" cellpadding="10" cellspacing="0"
|-
  ! colspan="3" style="color:DarkSlateGray; text-align:left; padding-left:40px;"| 1.5a.8 '''Reporting'''
|-
  ! style="color:brown; background-color:#ffffee; width:500px;"| Request for information
  ! style="color:brown; background-color:#ffffee; width:100px;"| Requirement code
  ! style="color:brown; background-color:#ffffee; width:700px;"| Vendor response
|-
  | style="padding:5px; width:500px;" |'''a.''' Does your system include a ''synoptic'' reporting module?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''b.''' Does your system produce specialized reports for microbiology, hematology, assay trend, and/or cardiac risk?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''c.''' Does your system produce epidemiology and antibiogram reports?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
|}
{| class="wikitable collapsible" border="1" cellpadding="10" cellspacing="0"
|-
  ! colspan="3" style="color:DarkSlateGray; text-align:left; padding-left:40px;"| 1.5a.9 '''Laboratory management'''
|-
  ! style="color:brown; background-color:#ffffee; width:500px;"| Request for information
  ! style="color:brown; background-color:#ffffee; width:100px;"| Requirement code
  ! style="color:brown; background-color:#ffffee; width:700px;"| Vendor response
|-
  | style="padding:5px; width:500px;" |'''a.''' Does your system include revenue management functionality, including medical necessity checks and profitability analysis?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
|}
===1.5b [[Electronic laboratory notebook]]===
{| class="wikitable collapsible" border="1" cellpadding="10" cellspacing="0"
|-
  ! colspan="3" style="color:DarkSlateGray; text-align:left; padding-left:40px;"| 1.5b.1 '''General functions'''
|-
  ! style="color:brown; background-color:#ffffee; width:500px;"| Request for information
  ! style="color:brown; background-color:#ffffee; width:100px;"| Requirement code
  ! style="color:brown; background-color:#ffffee; width:700px;"| Vendor response
|-
  | style="padding:5px; width:500px;" |'''a.''' Does your system allow bookmarking of pages, images, experiments, and other content?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''b.''' Does your system provide the option of a double signature scheme for the purpose of patent protection?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''c.''' Does your system allow for advanced queries of molecular patterns and properties, like those associated with the [[SMARTS (language)|SMARTS]] language?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''d.''' Does your system provide multi-lab management tools?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''e.''' Does your system integrate chemical drawing and computational tools?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''f.''' Does your system allow the import of [[ELN feature#Chemical and spectrum file support|chemical structure and spectroscopic files]]?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''g.''' Does your system permit users to query by functional group or designed structure?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''h.''' Can your system process text-to-structure conversions automatically?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''i.''' Can your system include a synthesis sheet parser and generator?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''j.''' Does your system provide a built-in instant messaging system for experiment and project collaborators?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''k.''' Does your system provide a searchable repository for user notebooks present and past?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
|}
{| class="wikitable collapsible" border="1" cellpadding="10" cellspacing="0"
|-
  ! colspan="3" style="color:DarkSlateGray; text-align:left; padding-left:40px;"| 1.5b.2 '''Configuration and customization'''
|-
  ! style="color:brown; background-color:#ffffee; width:500px;"| Request for information
  ! style="color:brown; background-color:#ffffee; width:100px;"| Requirement code
  ! style="color:brown; background-color:#ffffee; width:700px;"| Vendor response
|-
  | style="padding:5px; width:500px;" |'''a.''' Does your system permit users to create personal and sharable experiment templates?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
|}
{| class="wikitable collapsible" border="1" cellpadding="10" cellspacing="0"
|-
  ! colspan="3" style="color:DarkSlateGray; text-align:left; padding-left:40px;"| 1.5b.3 '''Pre-experiment'''
|-
  ! style="color:brown; background-color:#ffffee; width:500px;"| Request for information
  ! style="color:brown; background-color:#ffffee; width:100px;"| Requirement code
  ! style="color:brown; background-color:#ffffee; width:700px;"| Vendor response
|-
  | style="padding:5px; width:500px;" |'''a.''' Does your system provide compound and batch registration?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''b.''' Does your system allow editing of biological sequences at the molecular level?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''c.''' Does your system provide extensive experiment management tools to create, manage, and run single-step, multi-step, and other types of experiments?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''d.''' Does your system allow the creation of searchable image annotations?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''e.''' Does your system provide tools for making advanced chemical calculations, including stoichiometric, titration, and reaction yield calculations?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
|}
{| class="wikitable collapsible" border="1" cellpadding="10" cellspacing="0"
|-
  ! colspan="3" style="color:DarkSlateGray; text-align:left; padding-left:40px;"| 1.5b.4 '''Post-experiment'''
|-
  ! style="color:brown; background-color:#ffffee; width:500px;"| Request for information
  ! style="color:brown; background-color:#ffffee; width:100px;"| Requirement code
  ! style="color:brown; background-color:#ffffee; width:700px;"| Vendor response
|-
  | style="padding:5px; width:500px;" |'''a.''' Does your system allow users to comment on experiment results, observations, and conjectures as well as allow for linking to and from comments?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''b.''' Does your system allow users to create project Gantt charts?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''c.''' Does your system capture and store an encrypted PDF (or other document format) of a completed page?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''d.''' Does your system capture and store images from image analysis?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
|}
{| class="wikitable collapsible" border="1" cellpadding="10" cellspacing="0"
|-
  ! colspan="3" style="color:DarkSlateGray; text-align:left; padding-left:40px;"| 1.5b.5 '''Instruments'''
|-
  ! style="color:brown; background-color:#ffffee; width:500px;"| Request for information
  ! style="color:brown; background-color:#ffffee; width:100px;"| Requirement code
  ! style="color:brown; background-color:#ffffee; width:700px;"| Vendor response
|-
  | style="padding:5px; width:500px;" |'''a.''' Enter your own unique function here
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
|}
{| class="wikitable collapsible" border="1" cellpadding="10" cellspacing="0"
|-
  ! colspan="3" style="color:DarkSlateGray; text-align:left; padding-left:40px;"| 1.5b.6 '''External system interfaces'''
|-
  ! style="color:brown; background-color:#ffffee; width:500px;"| Request for information
  ! style="color:brown; background-color:#ffffee; width:100px;"| Requirement code
  ! style="color:brown; background-color:#ffffee; width:700px;"| Vendor response
|-
  | style="padding:5px; width:500px;" |'''a.''' Can your system interface with third-party chemical drawing tools like ChemDraw, MarvinSketch, and Ketcher?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''b.''' Can your system interface with chemistry databases, compound management systems, and substance logistics systems?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
  | style="padding:5px; width:500px;" |'''c.''' Can your system interface with other [[laboratory information management system]]s?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
|}
{| class="wikitable collapsible" border="1" cellpadding="10" cellspacing="0"
|-
  ! colspan="3" style="color:DarkSlateGray; text-align:left; padding-left:40px;"| 1.5b.7 '''Reporting'''
|-
  ! style="color:brown; background-color:#ffffee; width:500px;"| Request for information
  ! style="color:brown; background-color:#ffffee; width:100px;"| Requirement code
  ! style="color:brown; background-color:#ffffee; width:700px;"| Vendor response
|-
  | style="padding:5px; width:500px;" |'''a.''' Can your system automatically generate experiment reports at specified points in the experimental process?
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
|}
{| class="wikitable collapsible" border="1" cellpadding="10" cellspacing="0"
|-
  ! colspan="3" style="color:DarkSlateGray; text-align:left; padding-left:40px;"| 1.5b.8 '''Laboratory management'''
|-
  ! style="color:brown; background-color:#ffffee; width:500px;"| Request for information
  ! style="color:brown; background-color:#ffffee; width:100px;"| Requirement code
  ! style="color:brown; background-color:#ffffee; width:700px;"| Vendor response
|-
  | style="padding:5px; width:500px;" |'''a.''' Enter your own unique function here
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
|}
 
===1.5c [[Chromatography data management system|Chromatography]] and [[scientific data management system]]===
{| class="wikitable collapsible" border="1" cellpadding="10" cellspacing="0"
|-
  ! colspan="3" style="color:DarkSlateGray; text-align:left; padding-left:40px;"| 1.5c.1 '''Chromatography and scientific data management system'''
|-
  ! style="color:brown; background-color:#ffffee; width:500px;"| Request for information
  ! style="color:brown; background-color:#ffffee; width:100px;"| Requirement code
  ! style="color:brown; background-color:#ffffee; width:700px;"| Vendor response
|-
  | style="padding:5px; width:500px;" |'''a.''' Enter your own unique function here
  | style="background-color:white; padding:5px;" |
  | style="background-color:white;" |
|-
|}
|}

Revision as of 13:51, 8 May 2014

This is sublevel2 of my sandbox, where I play with features and test MediaWiki code. If you wish to leave a comment for me, please see my discussion page instead.

Sandbox begins below

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