File:Fig4 Lukauskas BMCBioinformatics2016 17-Supp16.gif

Figure 4. Simulation results for parameter set (v: 0.25, p: 0.25, fp: 0.1). a Left panel shows the dendrogram of clustered peaks using hierarchical clustering only. Peaks assigned to each of five different cluster are shown in yellow, pink, blue, red and green. X axis represents the pairwise distances d Right panel shows clustered peaks. Colour coding corresponds to normalized read counts. X axis represents original (unwarped) bins from start of the peaks. c Matthews Correlation Coefficient for hierarchical clustering based on a set of simulations with varying parameters (v, p) and fp fixed to 0.1. b and d as a and c but for DGW alignment followed by hierarchical clustering.

Lukauskas, S.; Visintainer, R.; Sanguinetti, G.; Schweikert, G.B. (2016). "DGW: An exploratory data analysis tool for clustering and visualisation of epigenomic marks". BMC Bioinformatics 17 (Suppl 16): 447. doi:10.1186/s12859-016-1306-0. PMC PMC5249015. PMID 28105912. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=PMC5249015. 

2016

Lukauskas, S.; Visintainer, R.; Sanguinetti, G.; Schweikert, G.B.

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